Scripts for the manuscript "The impact of rare protein coding genetic variation on adult cognitive function"

martipujolar/scripts: scripts used in "Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader"

martipujolar

November 2021

scripts used in the paper "Invasion genomics uncover contrasting scenarios of genetic diversity in a...

Scripts and data used in "Exon Capture Optimization in Large-Genome Amphibians"

Evan McCartney-Melstad (322188)

May 2018

<p>These are the scripts used to analyze the data and create the figures in the paper "Exon Capture ...

Scripts used for "Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination"

Hoehn, Kenneth B..
Pybus, Oliver G.
Kleinstein, Steven H.

October 2019

Perl and R scripts used in the publication: Repertoire-wide phylogenetic models of B cell molecular ...

Scripts for the manuscript "The impact of rare protein coding genetic variation on adult cognitive function"

Chen, Chia-Yen
Tian, Ruoyu
Ge, Tian
Lam, Max
Sanchez-Andrade, Gabriela
Singh, Tarjinder
Urpa, Lea
Liu, Jimmy
Sanderson, Mark
Rowley, Christine
Ironfield, Holly
Fang, Terry
Daly, Mark
Palotie, Aarno
Tsai, Ellen
Huang, Hailiang
Hurles, Matthew
Gerety, Sebastian
Lencz, Todd
Runz, Heiko

March 2023

Scripts used to process, QC and analyze the data and produce tables and figures for the manuscript "...

Scripts for the manuscript "Analysis across Taiwan Biobank, Biobank Japan and UK Biobank identifies hundreds of novel loci for 36 quantitative traits"

Chen, Chia-Yen
Chen, Tzu-Ting
Feng, Yen-Chen Anne
Yu, Mingrui
Lin, Shu-Chin
Longchamps, Ryan J.
Wang, Shi-Heng
Hsu, Yi-Hsiang
Yang, Hwai-I
Kuo, Po-Hsiu
Daly, Mark J.
Chen, Wei J.
Huang, Hailiang
Ge, Tian
Lin, Yen-Feng

August 2023

Scripts used to process, QC and analyze the data and produce tables and figures for the manuscript "...

Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts

Courtin, Emilie
Greener, Robert
Weiss, Jordan
Ware, Erin B.
Dowd, Jennifer B.
Rehkopf, David

July 2021

These R scripts can be used to reproduce the analysis for the paper: The changing relationship betwe...

Scripts for the manuscript 'Studying the genetics of participation using footprints left on the ascertained genotypes' .

Benonisdottir, S.
Kong, A.

May 2023

Scripts accompanying Benonisdottir and Kong (2023), 'Studying the genetics of participation using fo...

Code

Marek L. Borowiec (3255456)
Ernest K. Lee (191929)
Joanna C. Chiu (191938)
David C. Plachetzki (80304)

October 2016

Scripts used in analyses and plotting selected figures. See also https://github.com/marekborowiec...

Codes and scripts for "Protein-coding repeat polymorphisms strongly shape diverse human phenotypes."

Mukamel, Ronen E.
Handsaker, Robert E.
Sherman, Maxwell A.
Barton, Alison R.
Zheng, Yiming
McCarroll, Steven A.
Loh, Po-Ru

May 2021

This package contains the codes and scripts accompanying the manuscript "Protein-coding repeat polym...

Experiment scripts from "Biobank-scale inference of ancestral recombination graphs enables genealogical analysis of complex traits"

Brian C. Zhang
Arjun Biddanda
Árni Freyr Gunnarsson
Fergus Cooper
Pier Francesco Palamara

March 2023

Experiment scripts from "Biobank-scale inference of ancestral recombination graphs enables genealogi...

Optimized high-throughput screening of non-coding variants identified from genome-wide association studies - code

Tunc Morova (11836970)

November 2022

The scripts used for the analysis of our manuscript "Optimized high-throughput screening of non-codi...

Refining analyses of copy number variation identifies specific genes associated with developmental delay

Bradley P. Coe
Kali Witherspoon
Jill A. Rosenfeld
Bregje W. M. Van Bon
Anneke T
Vulto-van Silfhout
Paolo Bosco
Kathryn L. Friend
Carl Baker
Serafino Buono
Lisenka E. L. M. Vissers
Janneke H. Schuurs-hoeijmakers
Alex Hoischen
Nik Krumm
Gemma L. Carvill
Deana Li
David Amaral
Natasha Brown
J. Lockhart
Ingrid E Scheffer
Antonino Alberti
Marie Shaw
Rosa Pettinato
Raymond Tervo
Nicole De Leeuw
Margot R. F. Reijnders
Beth S. Torchia
Brian J. O&apos
Marco Fichera
Jayne Y. Hehir-kwa
Jay Shendure
Heather C. Mefford
Eric Haan
Jozef Gécz
Bert B. A. De Vries
Corrado Romano
Evan E. Eichler

August 2016

Users may view, print, copy, and download text and data-mine the content in such documents, for the ...

Scripts developed in the manuscript BIORXIV-2022-500634

Smadja Carole M.
Loire Etienne
Caminade Pierre
Severac Dany
Gautier Mathieu
Ganem Guila

October 2022

This repository compiles scripts that have been developed to analyse genomic data in manuscript BIOR...

R scripts and input data to create figures for "The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes"

Caroline Friedel

April 2023

Contains R scripts and input data to create figures for "The HSV-1 ICP22 protein selectively impairs...

scripts: converting GBS reads to genotypes

Irwin, Darren E.
Alcaide, Miguel
Delmore, Kira E.
Irwin, Jessica H.
Owens, Gregory L.

August 2016

This text file contains scripts and notes for the steps used in converting raw Illumina GBS sequenci...

martipujolar/scripts: scripts used in "Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader"

martipujolar

November 2021

scripts used in the paper "Invasion genomics uncover contrasting scenarios of genetic diversity in a...

Scripts and data used in "Exon Capture Optimization in Large-Genome Amphibians"

Evan McCartney-Melstad (322188)

May 2018

<p>These are the scripts used to analyze the data and create the figures in the paper "Exon Capture ...

Scripts used for "Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination"

Hoehn, Kenneth B..
Pybus, Oliver G.
Kleinstein, Steven H.

October 2019

Perl and R scripts used in the publication: Repertoire-wide phylogenetic models of B cell molecular ...

Scripts for the manuscript "The impact of rare protein coding genetic variation on adult cognitive function"

Chen, Chia-Yen
Tian, Ruoyu
Ge, Tian
Lam, Max
Sanchez-Andrade, Gabriela
Singh, Tarjinder
Urpa, Lea
Liu, Jimmy
Sanderson, Mark
Rowley, Christine
Ironfield, Holly
Fang, Terry
Daly, Mark
Palotie, Aarno
Tsai, Ellen
Huang, Hailiang
Hurles, Matthew
Gerety, Sebastian
Lencz, Todd
Runz, Heiko

March 2023

Scripts used to process, QC and analyze the data and produce tables and figures for the manuscript "...

Scripts for the manuscript "Analysis across Taiwan Biobank, Biobank Japan and UK Biobank identifies hundreds of novel loci for 36 quantitative traits"

Chen, Chia-Yen
Chen, Tzu-Ting
Feng, Yen-Chen Anne
Yu, Mingrui
Lin, Shu-Chin
Longchamps, Ryan J.
Wang, Shi-Heng
Hsu, Yi-Hsiang
Yang, Hwai-I
Kuo, Po-Hsiu
Daly, Mark J.
Chen, Wei J.
Huang, Hailiang
Ge, Tian
Lin, Yen-Feng

August 2023

Scripts used to process, QC and analyze the data and produce tables and figures for the manuscript "...

Analysis for: The changing relationship between genetic risk and cognitive decline across birth cohorts

Courtin, Emilie
Greener, Robert
Weiss, Jordan
Ware, Erin B.
Dowd, Jennifer B.
Rehkopf, David

July 2021

These R scripts can be used to reproduce the analysis for the paper: The changing relationship betwe...

Scripts for the manuscript 'Studying the genetics of participation using footprints left on the ascertained genotypes' .

Benonisdottir, S.
Kong, A.

May 2023

Scripts accompanying Benonisdottir and Kong (2023), 'Studying the genetics of participation using fo...

Code

Marek L. Borowiec (3255456)
Ernest K. Lee (191929)
Joanna C. Chiu (191938)
David C. Plachetzki (80304)

October 2016

Scripts used in analyses and plotting selected figures. See also https://github.com/marekborowiec...

Codes and scripts for "Protein-coding repeat polymorphisms strongly shape diverse human phenotypes."

Mukamel, Ronen E.
Handsaker, Robert E.
Sherman, Maxwell A.
Barton, Alison R.
Zheng, Yiming
McCarroll, Steven A.
Loh, Po-Ru

May 2021

This package contains the codes and scripts accompanying the manuscript "Protein-coding repeat polym...

Experiment scripts from "Biobank-scale inference of ancestral recombination graphs enables genealogical analysis of complex traits"

Brian C. Zhang
Arjun Biddanda
Árni Freyr Gunnarsson
Fergus Cooper
Pier Francesco Palamara

March 2023

Experiment scripts from "Biobank-scale inference of ancestral recombination graphs enables genealogi...

Optimized high-throughput screening of non-coding variants identified from genome-wide association studies - code

Tunc Morova (11836970)

November 2022

The scripts used for the analysis of our manuscript "Optimized high-throughput screening of non-codi...

Refining analyses of copy number variation identifies specific genes associated with developmental delay

Bradley P. Coe
Kali Witherspoon
Jill A. Rosenfeld
Bregje W. M. Van Bon
Anneke T
Vulto-van Silfhout
Paolo Bosco
Kathryn L. Friend
Carl Baker
Serafino Buono
Lisenka E. L. M. Vissers
Janneke H. Schuurs-hoeijmakers
Alex Hoischen
Nik Krumm
Gemma L. Carvill
Deana Li
David Amaral
Natasha Brown
J. Lockhart
Ingrid E Scheffer
Antonino Alberti
Marie Shaw
Rosa Pettinato
Raymond Tervo
Nicole De Leeuw
Margot R. F. Reijnders
Beth S. Torchia
Brian J. O&apos
Marco Fichera
Jayne Y. Hehir-kwa
Jay Shendure
Heather C. Mefford
Eric Haan
Jozef Gécz
Bert B. A. De Vries
Corrado Romano
Evan E. Eichler

August 2016

Users may view, print, copy, and download text and data-mine the content in such documents, for the ...

Scripts developed in the manuscript BIORXIV-2022-500634

Smadja Carole M.
Loire Etienne
Caminade Pierre
Severac Dany
Gautier Mathieu
Ganem Guila

October 2022

This repository compiles scripts that have been developed to analyse genomic data in manuscript BIOR...

R scripts and input data to create figures for "The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes"

Caroline Friedel

April 2023

Contains R scripts and input data to create figures for "The HSV-1 ICP22 protein selectively impairs...

scripts: converting GBS reads to genotypes

Irwin, Darren E.
Alcaide, Miguel
Delmore, Kira E.
Irwin, Jessica H.
Owens, Gregory L.

August 2016

This text file contains scripts and notes for the steps used in converting raw Illumina GBS sequenci...

martipujolar/scripts: scripts used in "Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader"

martipujolar

November 2021

scripts used in the paper "Invasion genomics uncover contrasting scenarios of genetic diversity in a...

Scripts and data used in "Exon Capture Optimization in Large-Genome Amphibians"

Evan McCartney-Melstad (322188)

May 2018

<p>These are the scripts used to analyze the data and create the figures in the paper "Exon Capture ...

Scripts used for "Repertoire-wide phylogenetic models of B cell molecular evolution reveal evolutionary signatures of aging and vaccination"

Hoehn, Kenneth B..
Pybus, Oliver G.
Kleinstein, Steven H.

October 2019

Perl and R scripts used in the publication: Repertoire-wide phylogenetic models of B cell molecular ...

Scripts for the manuscript "The impact of rare protein coding genetic variation on adult cognitive function"

Abstract

Extracted data

Scripts for the manuscript "The impact of rare protein coding genetic variation on adult cognitive function"

Abstract

Extracted data

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